Improving LLM pretraining with better data organization

“Best-fit packing” adapts bin-packing to avoid unnecessary truncation of training documents, improving LLM performance across a wide range of tasks and reducing hallucination.

The documents used to train a large language model (LLM) are typically concatenated to form a single “superdocument”, which is then divided into sequences that match the model's context length. This improves training efficiency but often results in unnecessary truncations, where individual documents are broken up across successive sequences.

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In paper we’re presenting at this year’s International Conference on Machine Learning (ICML 2024), titled “Fewer truncations improve language modeling”, we report an in-depth study of this common concatenation-chunking document-processing method. We found that it severely impairs the model's ability to understand contextual coherence and factual consistency. This not only affects the model's performance on downstream tasks but also increases the risk of hallucinations.

To address this issue, we propose best-fit packing, an innovative document-processing strategy that optimizes document combinations to eliminate unnecessary text truncations. In experiments, we compared a model trained using best-fit packing to one trained in the ordinary way on six downstream tasks: reading comprehension, natural-language inference, context following, summarization, commonsense and closed-book question answering, and program synthesis. We found that best-fit packing monotonically improves performance on an array of 22 sub-tasks, by as much as 15% (program synthesis) to 17% (context following). Importantly, best-fit packing also reduces closed-domain hallucination effectively by up to 58.3%.

Best-fit packing.png
A comparison of best-fit packing (left), which seeks to minimize document truncation, with the standard approach to large-language-model training, which concatenates training documents and then divides them into fixed-length sequences.

Consequences of truncation

In the analysis reported in our paper, we identified several problems caused by document truncation, including undefined names, ungrounded content, and missing knowledge.

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Undefined names: In programming languages like Python, truncation may separate definitions of variables from their invocations, introducing syntax errors and causing some variables to be undefined. As a consequence, the model may learn misleading patterns and possibly hallucinate on downstream tasks.

Ungrounded content: Truncation damages data integrity. In the example below, for instance, a reference (“the earthquake on Monday morning”) is separated from its antecedent, resulting in unfaithful generation.

Missing knowledge: Truncation hinders knowledge acquisition. In the example below, the model cannot learn the location of the ICML conference because the conference name and location occur in different training sequences.

Truncation errors.png
Examples of three common truncation errors: (a) undefined names, (b) ungrounded content, and (c) missing knowledge.

Best-fit packing

To address this issue, we propose optimizing the assignment of documents to training sequences so as to eliminate unnecessary truncations, while minimally increasing the number of sequences relative to concatenation. This is a variation of the well-known bin-packing problem, which is NP-hard in general, but we use a heuristic called the best-fit-decreasing (BFD) algorithm that tends to work well in practice. We thus call our method best-fit packing.

The normal implementation of BFD has quasi-linear time complexity, which is not efficient enough for LLM pretraining, which typically involves millions of documents. By taking advantage of the unique nature of pretraining data, however, we were able to optimize BFD so that it scales linearly with data size, ensuring its applicability to large-scale pretraining datasets. Further, we show that in practical applications, best-fit packing generates approximately the same number of training sequences as the traditional method, while significantly reducing data loss caused by truncation.

Truncations per document.png
Truncations per document as a function of document length, for both best-fit packing (pack) and concatenation (concat), for natural-language data (top) and programming-language data (bottom). The natural-language data is evaluated with context lengths of both 2,000 and 8,000.

Curious to know how we achieve it? Let’s dive deep!

Best-fit packing — an example

Following the standard bin-packing nomenclature, we call each training sequence a “bin”, and each bin has a capacity equal to the LLM’s context size. The goal is to assign a combination of whole documents to each bin so as to minimize the wasted bin capacity.

First, we divide any document that’s larger than the LLM context into context-length chunks, plus a remainder. Then we sort the documents (and document fragments) from largest to smallest. Finally, we work our way down the sorted list, assigning each document to the bin whose available space is as close to the document size as possible.

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To maximize efficiency, we use three data structures to manage the assignment of documents to bins: a binary tree and two tables. We can use this design because (1) the maximum bin size is the model’s context size, so the tree won’t be too deep, and (2) we do not need to distinguish bins with the same remaining capacity, which simplifies the the tree. Instead, we use the tables to map bin capacities to bins.

Consider a simple example, in which the context size (the bin size) is eight. The binary tree has eight leaves, corresponding to the eight possibilities for available space in any given bin. (In a real LLM, the context size is on the order of thousands of tokens, so the tree would have thousands of leaves.)

Each parent node of the tree has an associated number, indicating the size of the largest available bin slot among its descendants. The number associated with the parent’s right child is always greater than or equal to the number associated with the left child.

Initially, the value of the rightmost node in each layer of the tree is eight, and all the other nodes have values of zero. This means that all the available bin slots have a capacity of eight.

Best-fit initialization.png
The initial states of the three data structures we use to implement best-fit packing. The rightmost node of each layer of the tree has a value of eight, and all other nodes have values of zero, indicating that all the bins are empty (i.e., are at maximum capacity).

Now consider a later state, when four documents of size eight, six, six, and four have been packed. The two bins containing documents of size six have available slots of size two (8 – 6), and the bin containing a document of size four has an available slot of size four (8 – 4). These sizes are represented by the numbers two and four at leaves two and four of the tree. Multiple bins remain empty, so leaf eight has a value of eight, too.

Note that the value two at leaf two indicates only that at least one bin slot of size two is available; it doesn’t indicate how many such slots there are or where they can be found. That information is contained in the tables.

Tree after packing.png
The state of the data structures after four documents of sizes six, six, four, and eight have been packed.

Now consider a document of size three, which we wish to assign to a bin. To find the best available bin slot, simply go left at each node of the tree, unless going left leads to a node whose value is less than the document size, in which case, go right.

Document packing.png
Tree traversal identifies the available bin slot that best fits the new document.

The best fit for a document of size three is a slot of size four, and in the “space-to-bins” table, we see that there is one bin — bin three — with a slot of that size. So there we place the document.

Finally, we update all three data structures to reflect the new placement:

Data structure update.png
Data structure updates after the document (item four) of size three has been packed. The tree leaf corresponding to slot sizes of four is reset to zero, and the tree leaf corresponding to slot sizes of one is set to one. The tables are updated accordingly.

Results

To evaluate the effect of bin-packing on downstream tasks, we pretrained models of 7 billion and 13 billion parameters with context lengths of 2,000 and 8,000 on text and code using both best-fit packing and concatenation. We then tested both sets of models on our six downstream tasks. On average, across multiple datasets, context lengths, and metrics, best-fit packing offered better performance on all six tasks. The biggest gains came in reading comprehension (+4.7%), natural-language inference (+9.3%), context following (+16.8%), and program synthesis (+15.0%).

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We also found that best-fit packing helped prevent closed-domain hallucination, particularly in program synthesis tasks, where it reduced "undefined name" errors by up to 58.3%, indicating a more complete understanding of program structure and logic.

Additionally, models trained with best-fit packing were better at following instructions, such as adhering to length constraints. And best-fit packing helped the model acquire “tail knowledge” that is truncation sensitive due to scarcity in training data. Indeed, this result suggests a possible reason for why LLMs struggle to learn long-tail knowledge.

While the experiments conducted in our paper primarily focused on LLM pretraining, best-fit packing is broadly applicable to fine tuning as well. Determining the benefits it can offer during fine tuning is an intriguing topic for future study.

Research areas

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Amazon is seeking exceptional talent to help develop the next generation of advanced robotics systems that will transform automation at Amazon's scale. We're building revolutionary robotic systems that combine cutting-edge AI, sophisticated control systems, and advanced mechanical design to create adaptable automation solutions capable of working safely alongside humans in dynamic environments. This is a unique opportunity to shape the future of robotics and automation at an unprecedented scale, working with world-class teams pushing the boundaries of what's possible in robotic dexterous manipulation, locomotion, and human-robot interaction. This role presents an opportunity to shape the future of robotics through innovative applications of deep learning and large language models. At Amazon we leverage advanced robotics, machine learning, and artificial intelligence to solve complex operational challenges at an unprecedented scale. Our fleet of robots operates across hundreds of facilities worldwide, working in sophisticated coordination to fulfill our mission of customer excellence. The ideal candidate will contribute to research that bridges the gap between theoretical advancement and practical implementation in robotics. You will be part of a team that's revolutionizing how robots learn, adapt, and interact with their environment. Join us in building the next generation of intelligent robotics systems that will transform the future of automation and human-robot collaboration. Key job responsibilities - Design and implement whole body control methods for balance, locomotion, and dexterous manipulation - Utilize state-of-the-art in methods in learned and model-based control - Create robust and safe behaviors for different terrains and tasks - Implement real-time controllers with stability guarantees - Collaborate effectively with multi-disciplinary teams to co-design hardware and algorithms for loco-manipulation - Mentor junior engineer and scientists
US, CA, San Francisco
Amazon is seeking exceptional talent to help develop the next generation of advanced robotics systems that will transform automation at Amazon's scale. We're building revolutionary robotic systems that combine cutting-edge AI, sophisticated control systems, and advanced mechanical design to create adaptable automation solutions capable of working safely alongside humans in dynamic environments. This is a unique opportunity to shape the future of robotics and automation at unprecedented scale, working with world-class teams pushing the boundaries of what's possible in robotic manipulation, locomotion, and human-robot interaction. This role presents an opportunity to shape the future of robotics through innovative applications of deep learning and large language models. The ideal candidate will contribute to research that bridges the gap between theoretical advancement and practical implementation in robotics. You will be part of a team that's revolutionizing how robots learn, adapt, and interact with their environment. Join us in building the next generation of intelligent robotics systems that will transform the future of automation and human-robot collaboration. As an Applied Scientist, you will develop and improve machine learning systems that help robots perceive, reason, and act in real-world environments. You will leverage state-of-the-art models (open source and internal research), evaluate them on representative tasks, and adapt/optimize them to meet robustness, safety, and performance needs. You will invent new algorithms where gaps exist. You’ll collaborate closely with research, controls, hardware, and product-facing teams, and your outputs will be used by downstream teams to further customize and deploy on specific robot embodiments. Key job responsibilities As an Applied Scientist in the Foundations Model team, you will: - Leverage state-of-the-art models for targeted tasks, environments, and robot embodiments through fine-tuning and optimization. - Execute rapid, rigorous experimentation with reproducible results and solid engineering practices, closing the gap between sim and real environments. - Build and run capability evaluations/benchmarks to clearly profile performance, generalization, and failure modes. - Contribute to the data and training workflow: collection/curation, dataset quality/provenance, and repeatable training recipes. - Write clean, maintainable, well commented and documented code, contribute to training infrastructure, create tools for model evaluation and testing, and implement necessary APIs - Stay current with latest developments in foundation models and robotics, assist in literature reviews and research documentation, prepare technical reports and presentations, and contribute to research discussions and brainstorming sessions. - Work closely with senior scientists, engineers, and leaders across multiple teams, participate in knowledge sharing, support integration efforts with robotics hardware teams, and help document best practices and methodologies. About the team We leverage advanced robotics, machine learning, and artificial intelligence to solve complex operational challenges at unprecedented scale. Our fleet of robots operates across hundreds of facilities worldwide, working in sophisticated coordination to fulfill our mission of customer excellence. We are pioneering the development of robotics foundation models that: - Enable unprecedented generalization across diverse tasks - Integrate multi-modal learning capabilities (visual, tactile, linguistic) - Accelerate skill acquisition through demonstration learning - Enhance robotic perception and environmental understanding - Streamline development processes through reusable capabilities
US, CA, San Francisco
Amazon is seeking an exceptional Sr. Applied Scientist to lead the development of perception systems that harness the power of radar and thermal imaging — enabling robots to perceive and operate reliably in conditions where conventional vision alone falls short. In this role, you will develop ML-driven perception pipelines for non-traditional sensing modalities, pushing the boundaries of what robots can see, understand, and act upon in challenging real-world environments. At Amazon, we leverage advanced robotics, machine learning, and artificial intelligence to solve some of the most complex operational challenges at a scale unlike anywhere else in the world. Our fleet of robots spans hundreds of facilities globally, working in sophisticated coordination to deliver on our promise of customer excellence. As a Sr. Applied Scientist in Multi-Modal Perception, you will apply deep computer vision expertise alongside classical signal processing techniques for radar and thermal imaging — modalities that provide robustness in adverse conditions and sensing capability beyond the visible spectrum. You will develop ML-based methods to extract semantic and geometric information from radar point clouds, radar tensors, and thermal imagery, and fuse these with camera and depth data to build perception systems that are reliable, comprehensive, and ready for deployment at scale. Your work will unlock new capabilities for our robots — enabling reliable detection, classification, and scene understanding in low-visibility conditions, cluttered environments, and scenarios where traditional RGB-based perception is insufficient. You will lead research that translates cutting-edge advances in deep learning and computer vision to these underexplored but high-impact sensing modalities. Join us in building the next generation of multi-modal perception systems that will define the future of autonomous robotics at scale. Key job responsibilities - Lead the research, design, and development of ML-based perception pipelines for radar and thermal/infrared imaging modalities - Develop deep learning models for object detection, classification, segmentation, and tracking using radar data (point clouds, range-Doppler maps, radar tensors) and thermal imagery - Design and implement multi-modal fusion architectures that combine radar, thermal, camera, and depth data for robust, all-condition perception - Develop novel representations and feature extraction methods tailored to the unique characteristics of radar and thermal sensors (sparsity, noise profiles, spectral properties) - Build end-to-end perception systems — from raw sensor data processing and calibration to model training, evaluation, and real-time deployment - Collaborate closely with Hardware, Navigation, Planning, and Controls teams to define sensor configurations and deliver integrated autonomy solutions - Establish benchmarks, datasets, and evaluation frameworks for radar and thermal perception - Mentor scientists and engineers; foster a culture of scientific rigor, innovation, and high-impact delivery - Publish research findings in top-tier venues (CVPR, ICCV, ECCV, ICRA, NeurIPS, etc.) and contribute to patents A day in the life - Train ML models for deployment in simulation and real-world robots, identify and document their limitations post-deployment - Drive technical discussions within your team and with key stakeholders to develop innovative solutions to address identified limitations - Actively contribute to brainstorming sessions on adjacent topics, bringing fresh perspectives that help peers grow and succeed — and in doing so, build lasting trust across the team - Mentor team members while maintaining significant hands-on contribution to technical solutions About the team Our team is a diverse group of scientists and engineers passionate about building intelligent machines. We value curiosity, rigor, and a bias for action. We believe in learning from failure and iterating quickly toward solutions that matter.