Physics-constrained machine learning for scientific computing

Amazon researchers draw inspiration from finite-volume methods and adapt neural operators to enforce conservation laws and boundary conditions in deep-learning models of physical systems.

Commercial applications of deep learning have been making headlines for years — never more so than this spring. More surprisingly, deep-learning methods have also shown promise for scientific computing, where they can be used to predict solutions to partial differential equations (PDEs). These equations are often prohibitively expensive to solve numerically; using data-driven methods has the potential to transform both scientific and engineering applications of scientific computing, including aerodynamics, ocean and climate, and reservoir modeling.

A fundamental challenge is that the predictions of deep-learning models trained on physical data typically ignore fundamental physical principles. Such models might, for instance, violate system conservation laws: the solution to a heat transfer problem may fail to conserve energy, or the solution to a fluid flow problem may fail to conserve mass. Similarly, a model’s solution may violate boundary conditions — say, allowing heat flow through an insulator at the boundary of a physical system. This can happen even when the model’s training data includes no such violations: at inference time, the model may simply extrapolate from patterns in the training data in an illicit way.

In a pair of recent papers accepted at the International Conference on Machine Learning (ICML) and the International Conference on Learning Representations (ICLR), we investigate the problems of adding known physics constraints to the predictive outputs of machine learning (ML) models when computing the solutions to PDEs.

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The ICML paper, “Learning physical models that can respect conservation laws”, which we will present in July, focuses on satisfying conservation laws with black-box models. We show that, for certain types of challenging PDE problems with propagating discontinuities, known as shocks, our approach to constraining model outputs works better than its predecessors: it more sharply and accurately captures the physical solution and its uncertainty and yields better performance on downstream tasks.

In this paper, we collaborated with Derek Hansen, a PhD student in the Department of Statistics at the University of Michigan, who was an intern at AWS AI Labs at the time, and Michael Mahoney, an Amazon Scholar in Amazon’s Supply Chain Optimization Technologies organization and a professor of statistics at the University of California, Berkeley.

In a complementary paper we presented at this year’s ICLR, “Guiding continuous operator learning through physics-based boundary constraints”, we, together with Nadim Saad, an AWS AI Labs intern at the time and a PhD student at the Institute for Computational and Mathematical Engineering (ICME) at Stanford University, focus on enforcing physics through boundary conditions. The modeling approach we describe in this paper is a so-called constrained neural operator, and it exhibits up to a 20-fold performance improvement over previous operator models.

So that scientists working with models of physical systems can benefit from our work, we’ve released the code for the models described in both papers (conservation laws | boundary constraints) on GitHub. We also presented on both works in March 2023 at AAAI's symposium on Computational Approaches to Scientific Discovery.

Danielle Maddix Robinson on physics-constrained machine learning for scientific computing
A talk presented in April 2023 at the Machine Learning and Dynamical Systems Seminar at the Alan Turing Institute.

Conservation laws

Recent work in scientific machine learning (SciML) has focused on incorporating physical constraints into the learning process as part of the loss function. In other words, the physical information is treated as a soft constraint or regularization.

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A main issue with these approaches is that they do not guarantee that the physical property of conservation is satisfied. To address this issue, in “Learning physical models that can respect conservation laws”, we propose ProbConserv, a framework for incorporating constraints into a generic SciML architecture. Instead of expressing conservation laws in the differential forms of PDEs, which are commonly used in SciML as extra terms in the loss function, ProbConserv converts them into their integral form. This allows us to use ideas from finite-volume methods to enforce conservation.

In finite-volume methods, a spatial domain — say, the region through which heat is propagating — is discretized into a finite set of smaller volumes called control volumes. The method maintains the balance of mass, energy, and momentum throughout this domain by applying the integral form of the conservation law locally across each control volume. Local conservation requires that the out-flux from one volume equals the in-flux to an adjacent volume. By enforcing the conservation law across each control volume, the finite-volume method guarantees global conservation across the whole domain, where the rate of change of the system’s total mass is given by the change in fluxes along the domain boundaries.

Flux Volume Edit-01_230525135151.jpg
The integral form of a conservation law states that the rate of change of the total mass of the system over a domain (Ω) is equal to the difference between the in-flux and out-flux along the domain boundaries (∂Ω).

More specifically, the first step in the ProbConserv method is to use a probabilistic machine learning model — such as a Gaussian process, attentive neural process (ANP), or ensembles of neural-network models — to estimate the mean and variance of the outputs of the physical model. We then use the integral form of the conservation law to perform a Bayesian update to the mean and covariance of the distribution of the solution profile such that it satisfies the conservation constraint exactly in the limit.

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In the paper, we provide a detailed analysis of ProbConserv’s application to the generalized porous-medium equation (GPME), a widely used parameterized family of PDEs. The GPME has been used in applications ranging from underground flow transport to nonlinear heat transfer to water desalination and beyond. By varying the PDE parameters, we can describe PDE problems with different levels of complexity, ranging from “easy” problems, such as parabolic PDEs that model smooth diffusion processes, to “hard” nonlinear hyperbolic-like PDEs with shocks, such as the Stefan problem, which has been used to model two-phase flow between water and ice, crystal growth, and more complex porous media such as foams.

For easy GPME variants, ProbConserv compares well to state-of-the-art competitors, and for harder GPME variants, it outperforms other ML-based approaches that do not guarantee volume conservation. ProbConserv seamlessly enforces physical conservation constraints, maintains probabilistic uncertainty quantification (UQ), and deals well with the problem of estimating shock propagation, which is difficult given ML models’ bias toward smooth and continuous behavior. It also effectively handles heteroskedasticity, or fluctuation in variables’ standard deviations. In all cases, it achieves superior predictive performance on downstream tasks, such as predicting shock location, which is a challenging problem even for advanced numerical solvers.

Examples

Conservation of mass.png
Conservation of mass can be violated by a black-box deep-learning model (here, the ANP), even when the PDE is applied as a soft constraint (here, SoftC-ANP) on the loss function, à la physics-informed neural networks (PINNs). This figure shows the variation of total mass over time for the smooth constant coefficient diffusion equation (an “easy” GPME example). The true mass remains zero, since there is zero net flux from the domain boundaries, and thus mass cannot be created or destroyed in the domain interior.
Uncertainty quantification.png
Density solution profiles with uncertainty quantification. In the “hard” version of the GPME problem, also known as the Stefan problem, the solution profile may contain a moving sharp interface in space, known as a shock. The shock here separates the region with fluid from the degenerate one with zero fluid density. The uncertainty is largest in the shock region and becomes smaller in the areas away from it. The main idea behind ProbConserv’s UQ method is to use the uncertainty in the unconstrained black box to modify the mean and covariance at the locations where the variance is largest, to satisfy the conservation constraint. The constant-variance assumption in the HardC-ANP baseline does not result in improvement on this hard task, while ProbConserv results in a better estimate of the solution at the shock and a threefold improvement in the mean squared error (MSE).
Shock position.png
Downstream task. Histogram of the posterior of the shock position computed by ProbConserv and the other baselines. While the baseline models skew the distribution of the shock position, ProbConserv computes a distribution that is well-centered around the true shock position. This illustrates that enforcing physical constraints such as conservation is necessary in order to provide reliable and accurate estimations of the shock position.

Boundary conditions

Boundary conditions (BCs) are physics-enforced constraints that solutions of PDEs must satisfy at specific spatial locations. These constraints carry important physical meaning and guarantee the existence and the uniqueness of PDE solutions. Current deep-learning-based approaches that aim to solve PDEs rely heavily on training data to help models learn BCs implicitly. There is no guarantee, though, that these models will satisfy the BCs during evaluation. In our ICLR 2023 paper, “Guiding continuous operator learning through physics-based boundary constraints”, we propose an efficient, hard-constrained, neural-operator-based approach to enforcing BCs.

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Where most SciML methods (for example, PINNs) parameterize the solution to PDEs with a neural network, neural operators aim to learn the mapping from PDE coefficients or initial conditions to solutions. At the core of every neural operator is a kernel function, formulated as an integral operator, that describes the evolution of a physical system over time. For our study, we chose the Fourier neural operator (FNO) as an example of a kernel-based neural operator.

We propose a model we call the boundary-enforcing operator network (BOON). Given a neural operator representing a PDE solution, a training dataset, and prescribed BCs, BOON applies structural corrections to the neural operator to ensure that the predicted solution satisfies the system BCs.

BOON architecture full.png
BOON architectures. Kernel correction architectures for commonly used Dirichlet, Neumann, and periodic boundary conditions that carry different physical meanings.

We provide our refinement procedure and demonstrate that BOON’s solutions satisfy physics-based BCs, such as Dirichlet, Neumann, and periodic. We also report extensive numerical experiments on a wide range of problems including the heat and wave equations and Burgers's equation, along with the challenging 2-D incompressible Navier-Stokes equations, which are used in climate and ocean modeling. We show that enforcing these physical constraints results in zero boundary error and improves the accuracy of solutions on the interior of the domain. BOON’s correction method exhibits a 2-fold to 20-fold improvement over a given neural-operator model in relative L2 error.

Examples

Insulator at boundary.png
Nonzero flux at an insulator on the boundary. The solution to the unconstrained Fourier-neural-operator (FNO) model for the heat equation has a nonzero flux at the left insulating boundary, which means that it allows heat to flow through an insulator. This is in direct contradiction to the physics-enforced boundary constraint. BOON, which satisfies this so-called Neumann boundary condition, ensures that the gradient is zero at the insulator. Similarly, at the right boundary, we see that the FNO solution has a negative gradient at a positive heat source and that the BOON solution corrects this nonphysical result. Guaranteeing no violation of the underlying physics is critical to the practical adoption of these deep-learning models by practitioners in the field.
Stokes's second problem.png
Stokes’s second problem. This figure shows the velocity profile and corresponding absolute errors over time obtained by BOON (top). BOON improves the accuracy at the boundary, which, importantly, also improves accuracy on the interior of the domain compared to the unconstrained Fourier-neural-operator (FNO) model (bottom), where the errors at the boundary propagate inward over time.
Initial condition.png
2-D Navier-Stokes lid-driven cavity flow initial condition. The initial vorticity field (perpendicular to the screen), which is defined as the curl of the velocity field. At the initial time step, t = 0, the only nonzero component of the horizontal velocity is given by the top constant Dirichlet boundary condition, which drives the viscous incompressible flow at the later time steps. The other boundaries have the common no-slip Dirichlet boundary condition, which fixes the velocity to be zero at those locations.

Navier-Stokes lid-driven flow
2-D Navier-Stokes lid-driven cavity flow vorticity field. The vorticity field (perpendicular to the screen) within a square cavity filled with an incompressible fluid, which is induced by a fixed nonzero horizontal velocity prescribed by the Dirichlet boundary condition at the top boundary line for a 25-step (T=25) prediction until final time t = 2.
2-D Navier-Stokes lid-driven cavity flow relative error.
The L2 relative-error plots show significantly higher relative error over time for the data-driven Fourier neural operator (FNO) compared to that of our constrained BOON model on the Navier-Stokes lid-driven cavity flow problem for both a random test sample and the average over the test samples.

Acknowledgements: This work would have not been possible without the help of our coauthor Michael W. Mahoney, an Amazon Scholar; coauthors and PhD student interns Derek Hansen and Nadim Saad; and mentors Yuyang Wang and Margot Gerritsen.

Research areas

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This is a rare role that combines deep expertise in LLM reasoning and agentic AI with applied impact in life sciences. You will innovate on how large language models reason, plan, and act in complex scientific domains, while applying domain knowledge in biology to ensure models produce scientifically valid outputs. The problems span multiple fronts: - How do you build LLM-based agentic systems that correctly reason over clinical protocols, regulatory standards, and complex multi-step scientific workflows? - How do you develop model customization and training methods that let customers get state-of-the-art results from foundation models? - How do you adapt and extend protein and antibody models so customers can fine-tune on proprietary sequence data and get therapeutically relevant outputs? You will work across drug discovery (protein engineering, antibody design) and clinical trial operations (agentic automation, structured reasoning, domain adaptation). You will own end-to-end scientific solutions from research through production, and your work will directly shape the tools that thousands of scientists use daily. Key job responsibilities - Set the scientific vision and research agenda for LLM reasoning, agentic AI, and biological model customization across the portfolio - Innovate on LLM reasoning, planning, and agentic approaches for complex scientific and regulatory workflows - Develop model customization methods (fine-tuning, RLHF, retrieval augmentation, domain adaptation) that enable customers to train better models on their own data with less effort - Advance methods to adapt and extend biological foundation models for customer-specific therapeutic applications - Solve open research problems in faithful reasoning, multi-step planning, and tool use in high-stakes scientific domains - Partner with Life Sciences domain experts and customers to understand their hardest scientific challenges and translate those into tractable research problems - Publish at top-tier venues and build the team's external scientific reputation - Mentor applied scientists across the team while maintaining significant personal research contribution - Collaborate with product and engineering to ensure research translates into shipped products that serve customers at scale - Influence multi-year research roadmaps through deep scientific expertise and customer understanding A day in the life - Push a new reasoning approach into production that measurably improves outputs for a pharma customer's workflow - Design and run experiments to validate a novel fine-tuning method, then ship it as a capability customers can use immediately - Unblock a delivery milestone by diagnosing why a model is failing on a new class of inputs and implementing a fix - Meet with a customer's scientific team to scope what the next model release needs to do for them - Review a teammate's experimental results, sharpen the approach, and help get it over the finish line - Publish results from shipped work at a top venue, closing the loop between research and impact - Prototype a new idea that could become the next major capability in the product
US, WA, Seattle
Interested in modeling and understanding customer behavior through machine learning, artificial intelligence, and data mining over TB scale data with huge business impact on millions of customers? Join our team of Scientists developing models to model customer behavior and optimize the customer experience with Amazon Prime. This includes understanding who our customers are, long-term value of the Prime membership program, and creating the right personalized framework for content and subscription optimization. As an AI/ML expert, you will partner directly with product owners to intake, build, and directly apply your modeling solutions. There are numerous scientific and technical challenges you will get to tackle in this role, such as optimizing/fine-tuning GenAI/LLM solutions for Prime personalization, building GenAI foundation models, global scalability of models, combinatorial optimization, cold start problem, accelerated experimentation, short/long term goals modeling, and multi-step optimization leading to reinforcement learning of the customer journey. We employ techniques from GenAI/LLMs, supervised/semi-supervised learning, deep learning, transformer architectures, using outcomes from causal Econometric modeling, and Reinforcement learning. As the central science team within Prime, our expertise gets routinely called upon to weigh in on a variety of topics. We also emphasize the need and value of scientific research and have developed a strong publication and patent record (internally/externally) which you will be a part of. You will also utilize and be exposed to the latest in ML technologies and infrastructure: AWS technologies (EMR/Spark, Sagemaker, DynamoDB, S3, ClaudeCode), various AI/ML algorithms and techniques (Deep Learning, GenAI/LLMs, transformers, supervised/unsupervised/semi-supervised/reinforcement learning), and statistical modeling techniques. - Stay abreast of current literature in the field and advance/build novel science solutions leveraging SoTA solutions. - Build and develop AI/ML models and supporting infrastructure at TB scale, in coordination with software engineering teams. - Leverage Deep Learning and GenAI solutions for building foundation models and personalized optimization solution. - Develop offline policy estimation tools and integrate with measurement systems/econometric models. - Establish scalable, efficient, automated processes for large scale data analyses, science development, science validation and model implementation. - Analyze and extract relevant information from large amounts of Amazon’s historical business data to help automate and optimize key processes. - Work closely with the business to understand their problem space, identify the opportunities and formulate the problems. - Use AI/machine learning, data mining, statistical techniques and others to create actionable, meaningful, and scalable solutions for the business problems. - Design, develop and evaluate highly innovative models and statistical approaches to understand and predict customer behavior and to solve business problems. Key job responsibilities Key job responsibilities - Stay abreast of current literature in the field and advance/build novel science solutions leveraging SoTA solutions. - Build and develop AI/ML models and supporting infrastructure at TB scale, in coordination with software engineering teams. - Leverage Deep Learning and GenAI solutions for building foundation models and personalized optimization solution. - Develop offline policy estimation tools and integrate with measurement systems/econometric models. - Establish scalable, efficient, automated processes for large scale data analyses, science development, science validation and model implementation. - Analyze and extract relevant information from large amounts of Amazon’s historical business data to help automate and optimize key processes. - Work closely with the business to understand their problem space, identify the opportunities and formulate the problems. - Use AI/machine learning, data mining, statistical techniques and others to create actionable, meaningful, and scalable solutions for the business problems. - Design, develop and evaluate highly innovative models and statistical approaches to understand and predict customer behavior and to solve business problems.